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@uw-loci

UW-Madison LOCI

Laboratory for Optical and Computational Instrumentation: the UW-Madison research lab of Kevin Eliceiri

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  1. curvelets curvelets Public

    Curvelet-Transform based fibrillar collagen quantification (CurveAlign and CT-FIRE)

    MATLAB 25 18

  2. loci-scripts loci-scripts Public

    Scripts and macros for LOCI scientific problems

    Shell

  3. visbio-imagej visbio-imagej Public

    ImageJ plugins for 3D visualization using the VisAD toolkit

    Java 1

  4. misc-plugins misc-plugins Public

    Miscellaneous ImageJ plugins

    Java 2 1

  5. search-image-sc search-image-sc Public

    Image.sc search service

    Python

Repositories

Showing 10 of 117 repositories
  • qupath-extension-tiles-to-pyramid Public

    An extension to allow the creation of a pyramidal image file from individual tiles, based on known tile positions.

    uw-loci/qupath-extension-tiles-to-pyramid’s past year of commit activity
    Java 0 MIT 1 0 0 Updated Jan 8, 2026
  • qupath-extension-qpsc Public

    Java based extension for QuPath allowing control of a microscope through MicroManager

    uw-loci/qupath-extension-qpsc’s past year of commit activity
    Java 0 0 0 0 Updated Jan 8, 2026
  • QPSC Public

    QuPath Scope Control - Annotation-driven targeted microscopy acquisition from within QuPath

    uw-loci/QPSC’s past year of commit activity
    PowerShell 0 1 1 0 Updated Jan 8, 2026
  • microscope_configurations Public

    YAML configuration templates for QPSC microscope systems

    uw-loci/microscope_configurations’s past year of commit activity
    0 0 0 0 Updated Jan 8, 2026
  • microscope_control Public

    Hardware control library for microscopes via Pycromanager (Micro-Manager)

    uw-loci/microscope_control’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2026
  • ppm_library Public

    Image processing library for polarized light microscopy (PPM) and general microscopy imaging

    uw-loci/ppm_library’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2026
  • Flamingo_Control Public

    Controlling a Flamingo microscope from Python

    uw-loci/Flamingo_Control’s past year of commit activity
    Python 2 MIT 2 0 0 Updated Jan 8, 2026
  • flim-metrics Public
    uw-loci/flim-metrics’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 8, 2026
  • cellcast Public

    A recast of cell segmentation models built on the Burn deep learning framework.

    uw-loci/cellcast’s past year of commit activity
    Rust 4 MIT 0 1 0 Updated Jan 8, 2026
  • microscope_command_server Public

    Socket-based command server for remote microscope control and QuPath integration

    uw-loci/microscope_command_server’s past year of commit activity
    Python 0 0 0 0 Updated Jan 7, 2026
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