Skip to content

Sk new branch for merging changes #95

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
sarakurkowska wants to merge 16 commits into
base: dev
Choose a base branch
from
Open

Sk new branch for merging changes #95

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
16 commits
Select commit Hold shift + click to select a range
8608d41
add plot_MIP_with_mask_outlines
sarakurkowska Nov 5, 2025
1aaa6d4
improve formatting of variables
sarakurkowska Nov 5, 2025
4623ba7
rename variables for consistency
sarakurkowska Nov 5, 2025
6604d1b
add condition for when there are no lesions
sarakurkowska Nov 5, 2025
aac7403
improve mass scaling for total body
sarakurkowska Nov 13, 2025
88e7725
Merge branch 'dev' into sk_new_branch_for_merging_changes
sarakurkowska Nov 14, 2025
5d2e80d
get patient height
sarakurkowska Nov 19, 2025
c92c374
rename from rois to VOIs
sarakurkowska Nov 19, 2025
890e55b
adjust x axis based on the highest value
sarakurkowska Nov 26, 2025
2efa4cd
add height and change from rois to VOIs
sarakurkowska Nov 26, 2025
9f12424
add ICRP male phantom masses
sarakurkowska Nov 26, 2025
2a159e5
add washout ratio for biexponential washout
sarakurkowska Nov 26, 2025
cc77931
add washout_ratio
sarakurkowska Nov 26, 2025
ce5b42c
improve the report generator
sarakurkowska Nov 26, 2025
9df2dc0
add washout ratio
sarakurkowska Nov 26, 2025
fd78b26
update organ dosimetry
sarakurkowska Nov 26, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
22 changes: 14 additions & 8 deletions pytheranostics/data/output.json
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -4,8 +4,8 @@
"ClinicalTrial": "MyClinicalTrial",
"Radionuclide": "NA",
"PatientID": "NA",
"Gender": "NA",

"Gender": "NA",
"No_of_completed_cycles": "NA",
"Cycle_01": [
{
Expand All @@ -16,13 +16,14 @@
"InjectionTime": "NA",
"InjectedActivity": "NA",
"Weight_g": "NA",
"Height_cm": "NA",
"Level": "NA",
"Method": "NA",
"OutputFormat": "NA",
"ScaleDoseByDensity": "NA",
"ReferenceTimePoint": "NA",
"TimePoints_h": "NA",
"rois": {},
"VOIs": {},
"Organ-level_AD": {}
}
],
Expand All @@ -35,13 +36,14 @@
"InjectionTime": "NA",
"InjectedActivity": "NA",
"Weight_g": "NA",
"Height_cm": "NA",
"Level": "NA",
"Method": "NA",
"OutputFormat": "NA",
"ScaleDoseByDensity": "NA",
"ReferenceTimePoint": "NA",
"TimePoints_h": "NA",
"rois": {},
"VOIs": {},
"Organ-level_AD": {}
}
],
Expand All @@ -54,13 +56,14 @@
"InjectionTime": "NA",
"InjectedActivity": "NA",
"Weight_g": "NA",
"Height_cm": "NA",
"Level": "NA",
"Method": "NA",
"OutputFormat": "NA",
"ScaleDoseByDensity": "NA",
"ReferenceTimePoint": "NA",
"TimePoints_h": "NA",
"rois": {},
"VOIs": {},
"Organ-level_AD": {}
}
],
Expand All @@ -73,13 +76,14 @@
"InjectionTime": "NA",
"InjectedActivity": "NA",
"Weight_g": "NA",
"Height_cm": "NA",
"Level": "NA",
"Method": "NA",
"OutputFormat": "NA",
"ScaleDoseByDensity": "NA",
"ReferenceTimePoint": "NA",
"TimePoints_h": "NA",
"rois": {},
"VOIs": {},
"Organ-level_AD": {}
}
],
Expand All @@ -92,14 +96,15 @@
"InjectionTime": "NA",
"InjectedActivity": "NA",
"Weight_g": "NA",
"Height_cm": "NA",
"ApplyBiokineticsFromPreviousCycle": "NA",
"Level": "NA",
"Method": "NA",
"OutputFormat": "NA",
"ScaleDoseByDensity": "NA",
"ReferenceTimePoint": "NA",
"TimePoints_h": "NA",
"rois": {},
"VOIs": {},
"Organ-level_AD": {}
}
],
Expand All @@ -112,14 +117,15 @@
"InjectionTime": "NA",
"InjectedActivity": "NA",
"Weight_g": "NA",
"Height_cm": "NA",
"ApplyBiokineticsFromPreviousCycle": "NA",
"Level": "NA",
"Method": "NA",
"OutputFormat": "NA",
"ScaleDoseByDensity": "NA",
"ReferenceTimePoint": "NA",
"TimePoints_h": "NA",
"rois": {},
"VOIs": {},
"Organ-level_AD": {}
}
]
Expand Down
28 changes: 28 additions & 0 deletions pytheranostics/data/phantom/human/ICRP_mass_male_source.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,28 @@
Organ,Mass_g
Adrenals,14
Brain,1450
Esophagus,40
Eyes,15
Gallbladder Contents,58
LLI Cont,75
Small Intestine,350
Stomach Contents,250
ULI Cont,150
Rectum,75
Heart Contents,510
Heart Wall,330
Kidneys,310
Liver,1800
Lungs,1200
Pancreas,140
Prostate,17
Salivary Glands,85
Red Marrow,1170
Cortical Bone,4400
Trabecular Bone,1100
Spleen,150
Testes,35
Thymus,25
Thyroid,20
Urinary Bladder Contents,211
Total Body,73000
27 changes: 27 additions & 0 deletions pytheranostics/data/phantom/human/ICRP_mass_male_target.csv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,27 @@
Organ,Mass_g
Adrenals,14
Brain,1450
Esophagus,40
Eyes,15
Gallbladder Wall,10
LLI Wall,150
Small Intestine,650
Stomach Wall,150
ULI Wall,150
Rectum,70
Heart Wall,330
Kidneys,310
Liver,1800
Lungs,1200
Pancreas,140
Prostate,17
Salivary Glands,85
Red Marrow,1170
Cortical Bone,60
Trabecular Bone,60
Spleen,150
Testes,35
Thymus,25
Thyroid,20
Urinary Bladder Wall,50
Total Body,73000
Loading