-
Notifications
You must be signed in to change notification settings - Fork 37
Issue 3027 #3516
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Issue 3027 #3516
Conversation
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.
gouttegd
left a comment
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
It looks like you inadvertently created two “facial crest” terms.
And the first one has logical axioms that can’t be represented in OBO.
|
@meghalithic There are a lot of minor conflicts, likely due to the fact that the first commit of the PR was done nearly two years ago. Do you want me to resolve them for you? |
|
@gouttegd yes please! Thank you! |
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.
gouttegd
left a comment
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
The conflicts have been fixed (which makes the changes much easier to review now that they are no longer interspersed with unrelated changes).
The logical definition of 'nasal notch' is problematic, see below.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
Changes detected in src/ontology/uberon-edit.obo involving intersection_of. Review by specific Uberon Core Team member is required.
|
This PR has not seen any activity in the past month; if nobody comments or reviews it in the next week, the PR creator will be allowed to proceed with merging without explicit approval, should they wish to do so. |
|
@matentzn Should be ready for rebase since all the reviews have been completed. May encounter issue during rebasing replacing |
This PR modifies some logical definitions. See details below:Number of classes with modified logical definitions: 1 facial crestNo changes in inferred subclasses. |
Replaced 'intersection_of' with 'is_a' for the facial crest term to correct its classification. Removed the accidentally added obsolete term 'Facial crest' (UBERON:8500008) for ontology cleanup.
Corrected the spelling of the synonym from 'nasoincisve notch' to 'nasoincisive notch' for UBERON:8500006 in the ontology file.
matentzn
left a comment
There was a problem hiding this comment.
Choose a reason for hiding this comment
The reason will be displayed to describe this comment to others. Learn more.
I have made sure all of @gouttegd comments are implemented and will proceed to merge once QC has finished.
issue #3027
creating the following terms: facial crest, nasal notch, and staphylon