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bowtie/align inconsistencies with latest NF version

Status: Open.

#264 In nf-core/crisprseq;

· mirpedrol opened on Nov 20, 2025

Understand above_error_rate and why it's always False for insertion

Status: Open.

#254 In nf-core/crisprseq;

· npatel-ah opened on Aug 26, 2025

Add details for samples sheet creation

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#250 In nf-core/crisprseq;

· tkolarik opened on Jun 18, 2025

More than one target per sample

enhancementImprovement for existing functionalityImprovement for existing functionality

feature-requestRequest for a new pipeline featureRequest for a new pipeline feature

Status: Open.

#245 In nf-core/crisprseq;

· ashotmarg opened on May 5, 2025

Add 2FAST2Q as an alternative to the MAGeCK count / Bowtie2 combo on the screening workflow

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#243 In nf-core/crisprseq;

· afombravo opened on Mar 31, 2025

JSON schema: Crisprseq

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#242 In nf-core/crisprseq;

· jen-reeve opened on Mar 25, 2025

fastq concatenation

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#241 In nf-core/crisprseq;

· matbonfanti opened on Mar 24, 2025

add test for bowtie alignment

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#240 In nf-core/crisprseq;

· matbonfanti opened on Mar 24, 2025

·  

3.0.0

Allele frequencies for indels and edits

enhancementImprovement for existing functionalityImprovement for existing functionality

feature-requestRequest for a new pipeline featureRequest for a new pipeline feature

Status: Open.

#217 In nf-core/crisprseq;

· dtatarak opened on Nov 15, 2024

Mageck MLE Failes with non trival design matrix.

bugSomething isn't workingSomething isn't working

Status: Open.

#211 In nf-core/crisprseq;

· andrewholding opened on Oct 16, 2024

Pass DRUGZ in conda

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#189 In nf-core/crisprseq;

· LaurenceKuhl opened on Aug 1, 2024

Sample not being detected as edited despite evidence of editing in the bam file

bugSomething isn't workingSomething isn't working

Status: Open.

#188 In nf-core/crisprseq;

· alan-tracey opened on Jul 25, 2024