MoDec v1.2.1

Small update necessary for an R-package name update used when making the logo report html file:

• Changes only to the Rscript make_logo_report.R (and README files) to indicate
  to use ggseqlogoMOD instead of ggseqlogo following a rename of this forked
  package.

• Changes in this Rscript also increased the font size of the axes of the logo
  plots, and corrected a ggplot2 parameter name, removing some related
  deprecation warning message.

MoDec v1.2

• Added optional arguments MHC2, no_bestPepResp, kmer, alphabet,
  unk_aa, col_scheme, theta_norm, flat_freq, Salign (see the README
  for details about these options).
• The number of peptides below each motif in the report now corresponds to
  number of peptides assigned to this motif, after assigning each peptide to
  one motif based on its highest responsibility value (instead of considering
  fractional values based on the peptides's weight and responsibilities).
• The flat motif now has the same length as the other motifs (it does not
  show anymore the values used for this flat motif in the deconvolution as
  it was confusing to see motifs of different sizes).
• Updated license-related contact person.

MoDec version 1.1

Improved the layout of the html report, of the readme and other small changes.

MoDec version 1.0

Public release of MoDec version 1.0.