TUV-x photolysis #1471
TUV-x photolysis #1471
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modified: .gitmodules modified: cime_config/buildlib modified: libraries/tuv-x (new commits)
src/chemistry/mozart/chemistry.F90
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| call mee_ion_final() | ||
| call rate_diags_final() | ||
| call species_sums_final() | ||
| call tuvx_finalize() |
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Could maybe wrap this within if (tuvx_active) to be consistent with the other calls
| !----------------------------------------------------------------- | ||
| ! ... get calculated photolysis rates from TUV-x | ||
| !----------------------------------------------------------------- | ||
| call tuvx_get_photo_rates( state, pbuf, ncol, lchnk, zmid, zint, & |
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It looks like the only place tuvx_get_photo_rates uses state is to get state%ncol in line ~679, but ncol is already passed in here. Maybe state does not have to be passed in to call tuvx_get_photo_rates
| subroutine gas_phase_chemdr(lchnk, ncol, imozart, q, & | ||
| phis, zm, zi, calday, & | ||
| tfld, pmid, pdel, pint, rpdel, rpdeldry, & | ||
| cldw, troplev, troplevchem, & | ||
| ncldwtr, ufld, vfld, & | ||
| delt, ps, & | ||
| fsds, ts, asdir, ocnfrac, icefrac, & | ||
| precc, precl, snowhland, ghg_chem, latmapback, & | ||
| drydepflx, wetdepflx, cflx, fire_sflx, fire_ztop, nhx_nitrogen_flx, noy_nitrogen_flx, & | ||
| use_hemco, qtend, pbuf) | ||
| drydepflx, wetdepflx, cflx, fire_sflx, fire_ztop, & | ||
| nhx_nitrogen_flx, noy_nitrogen_flx, & | ||
| use_hemco, qtend, pbuf, state) |
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These changes appear to be unnecessary as state was already previously passed in as the first argument, and was moved to the last one for some reason.
| use mo_chm_diags, only : chm_diags, het_diags | ||
| use perf_mod, only : t_startf, t_stopf | ||
| use gas_wetdep_opts, only : gas_wetdep_method | ||
| use physics_types, only : physics_state |
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This line is a duplicate of line 318 and does not need to be added again
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The duplicate line has been removed
src/chemistry/mozart/chemistry.F90
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| call gas_phase_chemdr(lchnk, ncol, imozart, state%q, & | ||
| state%phis, state%zm, state%zi, calday, & | ||
| state%t, state%pmid, state%pdel, state%pint, state%rpdel, state%rpdeldry, & | ||
| cldw, tropLev, tropLevChem, ncldwtr, state%u, state%v, chem_dt, state%ps, & | ||
| fsds, cam_in%ts, cam_in%asdir, cam_in%ocnfrac, cam_in%icefrac, & | ||
| cam_out%precc, cam_out%precl, cam_in%snowhland, ghg_chem, state%latmapback, & | ||
| drydepflx, wetdepflx, cam_in%cflx, cam_in%fireflx, cam_in%fireztop, & | ||
| nhx_nitrogen_flx, noy_nitrogen_flx, use_hemco, ptend%q, pbuf ) | ||
| nhx_nitrogen_flx, noy_nitrogen_flx, use_hemco, ptend%q, pbuf, state ) |
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These changes appear to be unnecessary as state was already previously passed in as the first argument, and was moved to the last one for some reason.
src/chemistry/mozart/mo_tuvx.F90
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| integer, parameter :: PROFILE_INDEX_SO2 = 7 ! Sulfur dioxide profile index | ||
| integer, parameter :: PROFILE_INDEX_NO2 = 8 ! Nitrogen dioxide profile index |
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These appear to be non-public and unused, can I ask if these are intended to be not implemented?
src/chemistry/mozart/mo_tuvx.F90
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| ! Definition of the MS93 wavelength grid TODO add description of this | ||
| integer, parameter :: NUM_BINS_MS93 = 4 | ||
| real(kind=r8), parameter :: WAVELENGTH_EDGES_MS93(NUM_BINS_MS93+1) = & | ||
| (/ 181.6_r8, 183.1_r8, 184.6_r8, 190.2_r8, 192.5_r8 /) |
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Missed TODO here about the description here
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added a brief description
src/chemistry/mozart/mo_tuvx.F90
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| deallocate( cam_grids ) | ||
| deallocate( cam_profiles ) | ||
| deallocate( cam_radiators ) | ||
| deallocate( wavelength ) |
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Since wavelength => cam_grids%get_grid(...) I would suggest switching the deallocate order for safety
| deallocate( cam_grids ) | |
| deallocate( cam_profiles ) | |
| deallocate( cam_radiators ) | |
| deallocate( wavelength ) | |
| deallocate( wavelength ) | |
| deallocate( cam_grids ) | |
| deallocate( cam_profiles ) | |
| deallocate( cam_radiators ) |
|
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| host_profile => profiles%get_profile( "temperature", "K" ) | ||
| this%profiles_( PROFILE_INDEX_TEMPERATURE ) = this%core_%get_updater( host_profile, found ) | ||
| call assert( 418735162, found ) |
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Here and throughout the file, there are many calls to musica_assert::assert with seemingly random numbers for unique error codes. It seems to be consistent with what's done elsewhere in MUSICA, but I would request to at least have a comment somewhere that these numbers are just unique error codes and don't have any particular meaning other than being unique, and this is how the MUSICA library handles errors. Thanks!
src/chemistry/mozart/mo_tuvx.F90
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| ! || || | ||
| ! || | ||
| ! ----------------- i_int = pver | ||
| ! ================= i_imd = pver ------------------ i_int = 2 |
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typo here:
| ! ================= i_imd = pver ------------------ i_int = 2 | |
| ! ================= i_mid = pver ------------------ i_int = 2 |
deleted: src/chemistry/mozart/mo_setz.F90 deleted: src/chemistry/mozart/mo_tuv_inti.F90 modified: src/chemistry/mozart/chemistry.F90 modified: src/chemistry/mozart/mo_gas_phase_chemdr.F90 modified: src/chemistry/mozart/mo_tuvx.F90
2 participants
This provides the option to use the TUV-x library to compute photo-chemical rates in-line as an alternative to the traditional table look up method.
Closes #757