iyCamVagu1 EAR

[msozzoni]

Assembly review request

• ToLID: iyCamVagu1
• Species: Camponotus vagus
• Project: ERGA-BGE
• Affiliation: UNIFI

[erga-ear-bot]

Hi @msozzoni, thanks for sending the EAR of Camponotus vagus.
I added the corresponding tag to the PR and will contact a supervisor and a reviewer ASAP.

[erga-ear-bot]

Hi @additive3, do you agree to supervise this assembly?
Please reply to this message only with OK to give acknowledge.

[erga-ear-bot]

Ping @msozzoni,
One week without any movements on this PR!

[tbrown91]

ok

[erga-ear-bot]

*****
EAR Reviewer Selection Process
Date: 2026-01-27 16:50

All Eligible Candidates:

Github ID     | Full Name             | Institution | Total Reviews | Last Review | Active | Working PRs | Calling Score | Adjusted Score
-----------------------------------------------------------------------------------------------------------------------------------------
ldemirdj      | Lola Demirdjian       | Genoscope   | 13            | 2026-01-27  | Y      | 1           | 1042          | 1072          
auryjm        | Jean-Marc Aury        | Genoscope   | 14            | 2026-01-27  | Y      | 1           | 1041          | 1071          
MartinPippel  | Martin Pippel         | SciLifeLab  | 3             | 2026-01-20  | Y      | 1           | 1027          | 1057          
tommathers    | Tom Mathers           | Sanger      | 7             | 2025-10-16  | Y      | 1           | 1026          | 1056          
joannacollins | Jo Collins            | Sanger      | 7             | 2026-01-16  | Y      | 1           | 1026          | 1056          
DomAbsolon    | Dom Absolon           | Sanger      | 8             | 2025-11-04  | Y      | 1           | 1025          | 1055          
gbdias        | Guilherme Dias        | SciLifeLab  | 6             | 2026-01-23  | Y      | 1           | 1024          | 1054          
bistace       | Benjamin Istace       | Genoscope   | 12            | 2026-01-21  | Y      | 2           | 1044          | 1054          
additive3     | Jo Wood               | Sanger      | 8             | 2025-10-17  | Y      | 1           | 1025          | 1050          
EmilieTeo     | Emilie Teodori        | Genoscope   | 15            | 2025-12-15  | Y      | 2           | 1040          | 1050          
CaroB-M       | Caroline Menguy       | Genoscope   | 17            | 2026-01-20  | Y      | 2           | 1039          | 1049          
talioto       | Tyler Alioto          | CNAG        | 9             | 2026-01-09  | Y      | 2           | 1031          | 1041          
tbrown91      | Tom Brown             | IZW         | 12            | 2026-01-22  | Y      | 0           | 995           | 1040          
diegomics     | Diego De Panis        | IZW         | 11            | 2025-09-22  | Y      | 0           | 993           | 1038          
gitcruz       | Fernando Cruz         | CNAG        | 14            | 2026-01-14  | Y      | 2           | 1028          | 1038          
jesgomez      | Jessica Gomez Garrido | CNAG        | 14            | 2025-12-19  | Y      | 2           | 1027          | 1037          
SarahPelan    | Sarah Pelan           | Sanger      | 7             | 2025-12-19  | Y      | 2           | 1026          | 1036          

Selected reviewer: Lola Demirdjian (ldemirdj)
The decision was based on:
- different institution ('Genoscope')
- active ('Y')
- working on 1 PR(s) currently
- highest adjusted calling score in this particular selection (1072)
  (Note: Adjusted score already considering -20 points due to 1 ongoing PR(s))

[erga-ear-bot]

Hi @ldemirdj, do you agree to review this assembly?
Please reply to this message only with Yes or No by 02-Feb-2026 at 21:50 CET

[ldemirdj]

Yes

[erga-ear-bot]

Thanks for agreeing!
I appointed you as the EAR reviewer.
I will track this as one of your Working PRs until you finish this review.
Please check the Wiki if you need to refresh something. (and remember that you must download the EAR PDF to be able to click on the link to the contact map file!)
Contact the PR assignee for any issues.

[ldemirdj]

Hi @msozzoni, I have completed the review of this genome. Overall, it is good work, and I have no comments on the EAR report.
The only change I would suggest is to place scaffold_30_H2 as unlocalized on SUPER_7. Apart from that, I have nothing else to modify. Have you looked for an alternative telomeric motif for this genome? The track provides very limited information.

Thank you.

[msozzoni]

Hi @ldemirdj

Thank you for the suggestion. I will move the scaffold to unlocalized. I have looked in the literature and found only this telomeric region used (TTAGG). I've tried a couple of other sequences used for other insecta, but didn't get any signal at all.