Try Fix Linux File Enumeration (#663)

* Put try around root enumeration

* Update dependencies

Author: gfs

Benchmarks/Benchmarks.csproj

@@ -9,7 +9,7 @@
   </PropertyGroup>
 
   <ItemGroup>
-    <PackageReference Include="BenchmarkDotNet" Version="0.13.1" />
+    <PackageReference Include="BenchmarkDotNet" Version="0.13.2" />
     <PackageReference Include="LiteDB" Version="5.0.12" />
     <PackageReference Include="System.Data.SQLite" Version="1.0.116" />
     <PackageReference Include="murmurhash" Version="1.0.3" />

Cli/Cli.csproj

@@ -35,11 +35,11 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Microsoft.CodeAnalysis.Common" Version="4.2.0" />
-    <PackageReference Include="Microsoft.CodeAnalysis.CSharp" Version="4.2.0" />
-    <PackageReference Include="Microsoft.CST.OAT.Blazor.Components" Version="1.2.16" />
-    <PackageReference Include="Microsoft.CST.OAT.Scripting" Version="1.2.16" />
-    <PackageReference Include="Sarif.Sdk" Version="2.4.15" />
+    <PackageReference Include="Microsoft.CodeAnalysis.Common" Version="4.3.0" />
+    <PackageReference Include="Microsoft.CodeAnalysis.CSharp" Version="4.3.0" />
+    <PackageReference Include="Microsoft.CST.OAT.Blazor.Components" Version="1.2.29" />
+    <PackageReference Include="Microsoft.CST.OAT.Scripting" Version="1.2.29" />
+    <PackageReference Include="Sarif.Sdk" Version="3.1.0" />
     <PackageReference Include="Tewr.Blazor.FileReader" Version="3.3.1.21360" />
   </ItemGroup>
 

Directory.Build.props

@@ -2,7 +2,7 @@
 <Project ToolsVersion="15.0" xmlns="http://schemas.microsoft.com/developer/msbuild/2003">
   <ItemGroup>
     <PackageReference Include="Nerdbank.GitVersioning">
-      <Version>3.5.107</Version>
+      <Version>3.5.113</Version>
       <PrivateAssets>all</PrivateAssets>
     </PackageReference>
   </ItemGroup>

Lib/Collectors/FileSystemCollector.cs

@@ -350,12 +350,21 @@ internal override void ExecuteInternal(CancellationToken cancellationToken)
             foreach (var Root in Roots.Where(x => !opts.SkipDirectories.Any(y => x.StartsWith(y))))
             {
                 Log.Information("{0} root {1}", Strings.Get("Scanning"), Root);
-                var directories = Directory.EnumerateDirectories(Root, "*", new System.IO.EnumerationOptions()
+                var directories = Enumerable.Empty<string>();
+                try
+                {
+                    directories = Directory.EnumerateDirectories(Root, "*", new System.IO.EnumerationOptions()
+                    {
+                        ReturnSpecialDirectories = false,
+                        IgnoreInaccessible = true,
+                        RecurseSubdirectories = true
+                    }).Where(x => !opts.SkipDirectories.Any(x.StartsWith)).ToList();
+                }
+                catch (Exception e)
                 {
-                    ReturnSpecialDirectories = false,
-                    IgnoreInaccessible = true,
-                    RecurseSubdirectories = true
-                }).Where(x => !opts.SkipDirectories.Any(y => x.StartsWith(y)));
+                    Log.Debug("Failed to enumerate directories of {Root}. ({Type}:{Message})", Root, e.GetType().Name, e.Message);
+                }
+                    
 
                 // Process files in the root
                 TryIterateOnDirectory(Root);

Lib/Lib.csproj

@@ -35,18 +35,18 @@
 
   <ItemGroup>
     <PackageReference Include="MedallionShell" Version="1.6.2" />
-    <PackageReference Include="Microsoft.CodeAnalysis.Common" Version="4.2.0" />
-    <PackageReference Include="Microsoft.CodeAnalysis.CSharp" Version="4.2.0" />
-    <PackageReference Include="Microsoft.CST.OAT" Version="1.2.16" />
+    <PackageReference Include="Microsoft.CodeAnalysis.Common" Version="4.3.0" />
+    <PackageReference Include="Microsoft.CodeAnalysis.CSharp" Version="4.3.0" />
+    <PackageReference Include="Microsoft.CST.OAT" Version="1.2.29" />
     <PackageReference Include="Microsoft.CST.RecursiveExtractor" Version="1.1.11" />
     <PackageReference Include="Microsoft.SourceLink.GitHub" Version="1.1.1" PrivateAssets="All" />
-    <PackageReference Include="Microsoft.Data.Sqlite" Version="6.0.6" />
-    <PackageReference Include="Microsoft.PowerShell.Commands.Diagnostics" Version="7.2.5" />
-    <PackageReference Include="Microsoft.PowerShell.SDK" Version="7.2.5" />
+    <PackageReference Include="Microsoft.Data.Sqlite" Version="6.0.9" />
+    <PackageReference Include="Microsoft.PowerShell.Commands.Diagnostics" Version="7.2.6" />
+    <PackageReference Include="Microsoft.PowerShell.SDK" Version="7.2.6" />
     <PackageReference Include="Microsoft.Win32.Registry" Version="5.0.0" />
     <PackageReference Include="Microsoft.Windows.Compatibility" Version="6.0.0" />
-    <PackageReference Include="Serilog" Version="2.11.0" />
-    <PackageReference Include="Serilog.Sinks.Console" Version="4.0.1" />
+    <PackageReference Include="Serilog" Version="2.12.0" />
+    <PackageReference Include="Serilog.Sinks.Console" Version="4.1.0" />
     <PackageReference Include="Serilog.Sinks.File" Version="5.0.0" />
     <PackageReference Include="System.Diagnostics.Process" Version="4.3.0" />
     <PackageReference Include="System.Management" Version="6.0.0" />
@@ -66,7 +66,7 @@
     <PackageReference Include="CommandLineParser" Version="2.9.1" />
     <PackageReference Include="sqlite" Version="3.13.0" />
     <PackageReference Include="Microsoft.TSS" Version="2.1.1" />
-    <PackageReference Include="PeNet" Version="2.9.7" />
+    <PackageReference Include="PeNet" Version="2.9.8" />
   </ItemGroup>
   <ItemGroup>
     <EmbeddedResource Include="..\analyses.json" Link="analyses.json" />

Tests/Tests.csproj

@@ -13,7 +13,7 @@
   </ItemGroup>
 
   <ItemGroup>
-    <PackageReference Include="Microsoft.NET.Test.Sdk" Version="17.2.0" />
+    <PackageReference Include="Microsoft.NET.Test.Sdk" Version="17.3.1" />
     <PackageReference Include="MSTest.TestAdapter" Version="2.2.10" />
     <PackageReference Include="MSTest.TestFramework" Version="2.2.10" />
   </ItemGroup>