added new video

Author: simongravelle

level1/bulk-solution/localRun.sh

@@ -42,4 +42,10 @@ EOF
 
 ${gmx} msd -f production.xtc -s production.tpr -o sol-msd.xvg << EOF
     4
-EOF 
+EOF 
+
+${gmx} grompp -f inputs/video.mdp -c production.gro -p topol.top -o video -pp video -po video
+${gmx} mdrun -v -deffnm video -nt 8
+
+${gmx} trjconv -f video.xtc -s video.tpr -o video.xtc -pbc nojump
+

level1/bulk-solution/production.gro

@@ -1,8 +1,8 @@
 ;
 ;	File 'production.mdp' was generated
 ;	By user: simon (1000)
-;	On host: tower
-;	At date: Thu Jun  6 16:41:17 2024
+;	On host: laptop
+;	At date: Wed Jun 12 22:27:09 2024
 ;
 ;	Created by:
 ;	                     :-) GROMACS - gmx grompp, 2024.2 (-:
@@ -11,7 +11,7 @@
 ;	Data prefix:  /home/simon/Softwares/gromacs-2024.2 (source tree)
 ;	Working dir:  /home/simon/Git/GROMACS/inputs/level1/bulk-solution
 ;	Command line:
-;	  gmx grompp -f inputs/production.mdp -c npt.gro -p topol.top -o production -pp production -po production
+;	  gmx grompp -f inputs/production.mdp -c production.gro -p topol.top -o production -pp production -po production
 
 ; VARIOUS PREPROCESSING OPTIONS
 ; Preprocessor information: use cpp syntax.
@@ -175,7 +175,7 @@ annealing-temp           =
 ; GENERATE VELOCITIES FOR STARTUP RUN
 gen-vel                  = no
 gen-temp                 = 300
-gen-seed                 = -740853265
+gen-seed                 = -33816850
 
 ; OPTIONS FOR BONDS    
 constraints              = hbonds

level1/bulk-solution/production.mdp

@@ -4,13 +4,13 @@ for file in dark.*.ppm;
 do 
 	convert $file -transparent black  $file.png; # -crop 500x557+100+0
 done
-img2webp -o video-solution-dark.webp -q 10 -mixed -d 33.33 *.png 
+img2webp -o video-solution-dark.webp -q 10 -mixed -d 33 *.png 
 rm *.png
 
 for file in light.*.ppm; 
 do 
 	convert $file -transparent white  $file.png; # -crop 500x557+100+0
 done
-img2webp -o video-solution-white.webp -q 10 -mixed -d 33.33 *.png
+img2webp -o video-solution-white.webp -q 10 -mixed -d 33 *.png
 rm *.png