Update to work with changes to UFO filters (#72)

* ufo filterbase

* remove ufo ObsTraits
---------

Co-authored-by: mikecooke77 <[email protected]>

Author: ctgh

src/nemo-feedback/NemoFeedback.h

@@ -13,20 +13,19 @@
 #include "ioda/ObsDataVector.h"
 #include "oops/base/Variables.h"
 #include "oops/base/ObsVariables.h"
-#include "oops/interface/ObsFilterBase.h"
 #include "oops/util/ObjectCounter.h"
 #include "oops/util/Printable.h"
 #include "nemo-feedback/NemoFeedbackParameters.h"
 #include "nemo-feedback/feedback_io/Writer.h"
 #include "nemo-feedback/NemoFeedbackDataCreator.h"
 #include "ufo/filters/ObsFilterData.h"
-#include "ufo/ObsTraits.h"
+#include "ufo/ObsFilterBase.h"
 #include "ufo/utils/VariableNameMap.h"
 
 namespace nemo_feedback {
 
 /// \brief UFO filter for outputting data to NEMO feedback file
-class NemoFeedback : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
+class NemoFeedback : public ufo::ObsFilterBase,
                      private util::ObjectCounter<NemoFeedback> {
  public:
   static const std::string classname() {return "nemo_feedback::NemoFeedback";}
@@ -46,7 +45,7 @@ class NemoFeedback : public oops::interface::ObsFilterBase<ufo::ObsTraits>,
                   const ioda::ObsVector &ov,
                   const ioda::ObsVector &bv,
                   const ufo::ObsDiagnostics &dv) override;
-  void checkFilterData(const oops::FilterStage filterStage) override {}
+  void checkFilterData(const ufo::FilterStage filterStage) override {}
 
   oops::Variables requiredVars() const override {return geovars_;}
   oops::ObsVariables requiredHdiagnostics() const override {return extradiagvars_;}

src/nemo-feedback/NemoFeedbackParameters.h

@@ -8,11 +8,11 @@
 #include <vector>
 
 #include "eckit/exception/Exceptions.h"
-#include "oops/generic/ObsFilterParametersBase.h"
 #include "oops/util/parameters/Parameter.h"
 #include "oops/util/parameters/OptionalParameter.h"
 #include "oops/util/parameters/RequiredParameter.h"
 #include "ufo/filters/processWhere.h"
+#include "ufo/ObsFilterParametersBase.h"
 #include "nemo-feedback/NemoFeedbackParameterTraitsOutputDtype.h"
 
 namespace nemo_feedback {
@@ -43,9 +43,9 @@ class NemoFeedbackVariableParameters : public oops::Parameters {
 };
 
 /// \brief NemoFeedback options.
-class NemoFeedbackParameters : public oops::ObsFilterParametersBase {
+class NemoFeedbackParameters : public ufo::ObsFilterParametersBase {
   OOPS_CONCRETE_PARAMETERS(NemoFeedbackParameters,
-      oops::ObsFilterParametersBase)
+      ufo::ObsFilterParametersBase)
 
  public:
   oops::Parameter<std::string> Filename{"filename", "nemo_fdbk_out.nc", this};

src/nemo-feedback/instantiateObsFilterFactory.h

@@ -4,14 +4,13 @@
 
 #pragma once
 
-#include "oops/interface/ObsFilterBase.h"
 #include "nemo-feedback/NemoFeedback.h"
+#include "ufo/ObsFilterBase.h"
 
 namespace nemo_feedback {
 
-template<typename OBS>
 void instantiateObsFilterFactory() {
-  static oops::interface::FilterMaker<OBS, NemoFeedback>
+  static ufo::FilterMaker<NemoFeedback>
     makerNemoFeedback_("NEMO Feedback Writer");
 }
 

src/tests/mains/TestObsFilters.cc

@@ -6,12 +6,11 @@
 #include "oops/runs/Run.h"
 #include "nemo-feedback/instantiateObsFilterFactory.h"
 #include "ufo/instantiateObsFilterFactory.h"
-#include "ufo/ObsTraits.h"
 
 int main(int argc,  char ** argv) {
   oops::Run run(argc, argv);
   ufo::instantiateObsFilterFactory();
-  nemo_feedback::instantiateObsFilterFactory<ufo::ObsTraits>();
+  nemo_feedback::instantiateObsFilterFactory();
   ufo::test::ObsFilters tests;
   return run.execute(tests);
 }