Rename alphafold backend to alphafold2 #1481
DimaMolodgithub_actions.yml
on: push
build-alphafold2-container
7m 54s
build-alphalink-container
9m 45s
build-alphafold3-container
9m 13s
build-analysis-container
3m 23s
Matrix: build-and-test
Annotations
1 error and 8 warnings
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build-alphafold3-container
buildx failed with: ERROR: failed to build: failed to solve: process "/bin/bash -l -c conda run -n af3 python -c \"import csv; import dataclasses; import datetime; import functools; import logging; import os; import pathlib; import string; import textwrap; import time; import typing; from collections.abc import Sequence; from typing import List, Dict, Union; import haiku as hk; import jax; import numpy as np; from jax import numpy as jnp; from alphafold.common import residue_constants; from alphafold.common.protein import Protein, to_mmcif; from alphafold3.common import base_config, folding_input; from alphafold3.constants import chemical_components; import alphafold3.cpp; from alphafold3.data import featurisation, pipeline; from alphafold3.jax.attention import attention; from alphafold3.model import features, params, post_processing; from alphafold3.model.components import utils; from alphafold3.model import model; from alphapulldown.folding_backend.folding_backend import FoldingBackend; from alphapulldown.objects import MultimericObject, MonomericObject, ChoppedObject; print('All imports succeeded!')\"" did not complete successfully: exit code: 1
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build-and-test (3.10, developer)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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build-and-test (3.10, developer)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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build-and-test (3.11, developer)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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build-and-test (3.11, developer)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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build-and-test (3.10, user)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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build-and-test (3.10, user)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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build-and-test (3.11, user)
WARNING conda.cli.main_config:_set_key(451): Key auto_activate_base is an alias of auto_activate; setting value with latter
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build-and-test (3.11, user)
The 'defaults' channel might have been added implicitly. If this is intentional, add 'defaults' to the 'channels' list. Otherwise, consider setting 'conda-remove-defaults' to 'true'.
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